SNP Profiles matching SLC 24

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
1._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
2._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
3._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
4._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
5._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
6._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
7._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
8._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
9._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
10._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
11._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
12._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
13._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
14._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
15._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
16._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
17._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
18._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
19._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
20._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
21._SLC_24	GG	AT	AC	GT	_	AA	CC	AG	CC	AT	GG	AA	CC	TT
22._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
23._GC-08-093-2-16	GG	AT	AC	GT	_	AA	CC	AG	CC	AT	GG	AA	CC	TT
24._MARPER_45	-	AT	-	GT	-	-	-	AG	CT	-	GG	AG	CC	TT
25._MARPER_55	-	AT	-	GG	-	-	-	AA	CC	-	GG	AG	CC	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
1._SLC_24	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
2._SLC_24	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
3._SLC_24	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
4._SLC_24	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
5._SLC_24	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
6._SLC_24	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
7._SLC_24	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
8._SLC_24	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
9._SLC_24	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
10._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
11._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
12._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
13._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
14._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
15._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
16._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
17._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
18._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
19._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
20._SLC_24	GT	CC	CC	CT	TT	CG	CC	_	GG	AA	TT	AG	CT	AA
21._SLC_24	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
22._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	_	GG	AA	TT	AG	CT	AA
23._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA
24._MARPER_45	-	CC	-	TT	GT	-	CC	-	GG	AA	TT	AG	-	AA
25._MARPER_55	-	CC	-	CT	GT	-	CC	-	GG	AA	TT	AG	-	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
1._SLC_24	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
2._SLC_24	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
3._SLC_24	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
4._SLC_24	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
5._SLC_24	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
6._SLC_24	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
7._SLC_24	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
8._SLC_24	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
9._SLC_24	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
10._GC-08-093-2-16	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
11._GC-08-093-2-16	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
12._GC-08-093-2-16	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
13._GC-08-093-2-16	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
14._GC-08-093-2-16	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
15._GC-08-093-2-16	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
16._GC-08-093-2-16	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
17._GC-08-093-2-16	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
18._GC-08-093-2-16	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
19._GC-08-093-2-16	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
20._SLC_24	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
21._SLC_24	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
22._GC-08-093-2-16	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
23._GC-08-093-2-16	AA	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X
24._MARPER_45	AA	-	CT	-	CC	AA	-	CT	GG	AA	TT	X_X	X_X	X_X
25._MARPER_55	AA	-	CT	-	CC	AA	-	CT	GG	AA	TT	X_X	X_X	X_X

Input profile: SLC_24

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 2 > FP

Dapeng Zhang, 2016

1._SLC_24

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 6

Dapeng Zhang, 2016

2._SLC_24

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 7

Dapeng Zhang, 2016

3._SLC_24

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 8

Dapeng Zhang, 2016

4._SLC_24

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 9

Dapeng Zhang, 2016

5._SLC_24

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 10

Dapeng Zhang, 2016

6._SLC_24

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 12

Dapeng Zhang, 2016

7._SLC_24

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 14

Dapeng Zhang, 2016

8._SLC_24

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 18

Dapeng Zhang, 2016

9._SLC_24

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 5 > FP

Dapeng Zhang, 2016

10._SLC_24 GC-08-093-2-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

11._SLC_24 GC-08-093-2-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

12._SLC_24 GC-08-093-2-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

13._SLC_24 GC-08-093-2-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

14._SLC_24 GC-08-093-2-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

15._SLC_24 GC-08-093-2-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

16._SLC_24 GC-08-093-2-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

17._SLC_24 GC-08-093-2-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

18._SLC_24 GC-08-093-2-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

19._SLC_24 GC-08-093-2-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 18

Notes: 18

20._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 16

Dapeng Zhang, 2016

21._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 17

Dapeng Zhang, 2016

22._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

23._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 17

Notes: 17

24._MARPER_45

92 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 251A

Dapeng Zhang, 2014

25._MARPER_55

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER C 249

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP723	20	TcSNP872
21	TcSNP891	22	TcSNP917	23	TcSNP929	24	TcSNP953	25	TcSNP994
26	TcSNP998	27	TcSNP1060	28	TcSNP1062	29	TcSNP1075	30	TcSNP1144
31	TcSNP1165	32	TcSNP1253	33	TcSNP1270	34	TcSNP1350	35	TcSNP1414
36	TcSNP1442	37	TcSNP1458	38	TcSNP1484	39	TcSNP1520